PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 396aa    MW: 45155.9 Da    PI: 7.0585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30950genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-05232251120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++Cp C k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA30950 232 FSCPVCFKTFNRYNNMQMHM 251
                                89*****************9 PP

2zf-C2H214.10.00014316338123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C +Cgk F  + + ++H +++
  Tp57577_TGAC_v2_mRNA30950 316 FMCRKCGKAFAVRGDWRTHEKNC 338
                                89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64232259IPR007087Zinc finger, C2H2
SMARTSM003550.38232254IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-6232251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-6298336No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5312336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549316336IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808316336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MADPYSNFFS SNFFQFNNNN NSTHHFPSSN PSPHHHHPNY LHNFINHTTF NNTNTNNTNT  60
FFHYHHHLHH LQSTPSSSYS SSSPSSPPLK EALPLLSLIP TKQEEYDVLE QHHHLHQIHH  120
DETCTSMEVE DCRYNDNNNK VEKKDDDDDE SVTVALHIGL PNPSAAEIAT MMMSSSSSEM  180
MNNERDNQLL QGDVISEDSC SAGLLSSNRS QINKGQYWIP TPSQILIGPT QFSCPVCFKT  240
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC CSPGCRNNID HPRAKPLKDF  300
RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCLCGSDF KHKRSLKDHI  360
RAFGSGHAAY GINGFEEEDE PASEVEQDND STQTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513647.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-144ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0R0KIS41e-179A0A0R0KIS4_SOYBN; Uncharacterized protein
TrEMBLA0A0B2PI421e-179A0A0B2PI42_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLK7KEY81e-179K7KEY8_SOYBN; Uncharacterized protein
STRINGGLYMA03G29610.21e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-137C2H2 family protein